Bisulfite seq

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Bisulfite seq

Mathew Bunj
Do we have any tool which can be used for analyzing and QC check for bisulfite sequencing. I have FASTq files.

Thanks

Mathew

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Re: Bisulfite seq

Björn Grüning-2
Hi Mathew,

I have a mapper (bismark) and my own tools (+wrapper) and was able to do
an entire analysis with it. The bismark wrapper is in the toolshed. The
other tools can be found in my github repository.

https://github.com/bgruening

galaxytools and methtools

Hope that helps,
Bjoern

> Do we have any tool which can be used for analyzing and QC check for
> bisulfite sequencing. I have FASTq files.
>
>
> Thanks
>
>
> Mathew
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
>
>   http://lists.bx.psu.edu/listinfo/galaxy-dev
>
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
>
>   http://lists.bx.psu.edu/
>
> To search Galaxy mailing lists use the unified search at:
>
>   http://galaxyproject.org/search/mailinglists/


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
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