Galaxy Users List Archive

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Galaxy

Archive for the Galaxy-User mailing list. If you have a question about the public Galaxy instance at UseGalaxy.org, then this is a good place to find an anaswer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs. You can also search the archives of the Galaxy-Dev mailing list. Galaxy is a part of the Generic Model Organism Database (GMOD) project.


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Topics (1701)
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cuffmerge loses p_id by webercm
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by Jennifer Jackson
Bowtie reference genome by Fang, Xiefan
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by Jennifer Jackson
FASTq sanger to Illumina FASTq by shamsher jagat
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by Jennifer Jackson
GCC2012 Update by Dave Clements-3
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by Dave Clements-3
May 11, 2012 Galaxy Development News Brief by Jennifer Jackson
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by Jennifer Jackson
/mnt/galaxyIndices/hg19/bwa/base/hg19 not found by Zeeshan Ali Shah
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by Enis Afgan
Displaying bed files in ucsc by Xianrong Wong
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by Hiram Clawson
mount issue by Zeeshan Ali Shah
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by Enis Afgan
default data for a tool by alex-2
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by Jennifer Jackson
Help!!! cuffdiff log2 value by guzhi12345
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by Jennifer Jackson
operate on genomic intervals by Xianrong Wong
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by Jennifer Jackson
Help on installing cutadapt by Tilahun Abebe
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by Jennifer Jackson
Filtering a VCF file by Laura Reinholdt
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by Jennifer Jackson
Get flanks (version 1.0.0) by Fabricia
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by Jennifer Jackson
GMOD 2013 meeting location survey by Scott Cain
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by Scott Cain
Problem with executing larger files by Dhanushki Samaranaya...
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by Jennifer Jackson
Download multiple files from history by Adhemar
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by Dannon Baker
Question about Samtools filter in Galaxy by shamsher jagat
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by Jennifer Jackson
Mappability by Brown, Stuart
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by Jennifer Jackson
May 2012 Galaxy Update by Dave Clements-3
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by Dave Clements-3
subtract by Xianrong Wong
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by Jennifer Jackson
suggestion to change cuffdiff -c "Min alignment count" default to author's value of '10' by Kevin Silverstein
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by Jeremy Goecks
Tophat mapping error by guzhi12345
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by Jennifer Jackson
bwa/bowtie not running by Furey, Terry
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by Jennifer Jackson
Cufflinks jobs in queue by Scroggins, Sheena
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by Jennifer Jackson
Chicken reference genome by Nicholas Beckloff
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by Jennifer Jackson
bowtie stuck for past day by Eirini Trompouki
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by Jennifer Jackson
long time waiting to run tophat jobs by Matthew McCormack
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by Jennifer Jackson
Jobs in queue by guzhi12345
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by guzhi12345
please help rmdupl by Teresita Diaz De Stå...
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by Jennifer Jackson
Cuffmerge - "Use Sequence" option. by Mohammad Heydarian
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by Jeremy Goecks
MegaBLAST output by garlicscape
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by Peter Cock
Arabidopsis thaliana genome by Franziska Turck
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by Matthew McCormack
USing GATK DepthOfCoverage with all exon enriched data by Lilach F
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by Jennifer Jackson
Cuffdiff by Ateequr Rehman
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by Jennifer Jackson
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