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Galaxy Users List Archive

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Galaxy

Archive for the Galaxy-User mailing list. If you have a question about the public Galaxy instance at UseGalaxy.org, then this is a good place to find an anaswer.

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational biomedical research.

  • Accessibility: Galaxy enables users without programming experience to easily specify parameters and run tools and workflows.
  • Reproducibility: Galaxy captures all information necessary so that any user can repeat and understand a complete computational analysis.
  • Transparency: Galaxy enables users to share and publish analyses via the web and create Pages--interactive, web-based documents that describe a complete analysis.
Galaxy is open source for all organizations. The public Galaxy service makes analysis tools, genomic data, tutorial demonstrations, persistent workspaces, and publication services available to any scientist that has access to the Internet. Local Galaxy servers can be set up by downloading the Galaxy application and customizing it to meet particular needs.

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Topics (2329)
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(no subject) by Peppe
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by Jennifer Jackson
changing parameters in tophat by Colaneri, Alejandro ...
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by Jennifer Jackson
GCC2013 Early Registration ends this Friday, 24 May by Dave Clements-3
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by Dave Clements-3
User -> Custom Builds fail on public server by Michael Axtell
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by Michael Axtell
Raw counts from Galaxy by Els Willems
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by Jennifer Jackson
failed Tophat processing steps by Nikolay N.
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by Jennifer Jackson
Duplicate Accounts on Main by Dave Clements-3
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by Dave Clements-3
receiving an email when a processing step finishes by Nikolay N.
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by Dannon Baker-2
Dataset does not appear in a drop-down menu of a tool by Nikolay N.
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by Jennifer Jackson
Question on galaxy data visualization by Sun, Wenping [USA]
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by Sun, Wenping [USA]
problem uploading txt data by Chunyu Liu
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by Chunyu Liu
Jobs delay by Benjamin Leblanc
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by Jennifer Jackson
Query not starting by Neel Aluru
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by Neel Aluru
A new version of the Genomic HyperBrowser has been released! by Sveinung Gundersen
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by Sveinung Gundersen
Map with BWA for Illumina is hung by rmc7777
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by Jennifer Jackson
How to analyze the Encode RNA-seq data from UCSC genome browser with Galazy by Santagostino Marco
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by Santagostino Marco
nebula problem by ge2sasag
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by Jennifer Jackson
Filter Fastq by rmc7777
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by Jennifer Jackson
problems with Tophat by Elwood Linney
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by ge2sasag
Workflow not running by Lanelle Oni Edwards
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by Jennifer Jackson
Support for other Genomes in SNPeff by Diego Borges-Rivera
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by Diego Borges-Rivera
Error in Tophat by lilach noy
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by Jennifer Jackson
Downloading files via FTP by lilach noy
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by Geert Vandeweyer
purging deleted histories by s_hight
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by Jennifer Jackson
server error query by shreya ghosh
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by Jennifer Jackson
May 2013 Galaxy Update by Dave Clements-3
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by Dave Clements-3
trimming illumina reads from 3' without considering quality score by Mathew Bunj
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by Jennifer Jackson
Tophat for Illumina is not running by lilach noy
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by Jennifer Jackson
Can Galaxy help with Comparative Genomics? by Joshua Burkhart [uor...
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by Joshua Burkhart [uor...
GFF parsing with biopython by Mic
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by Mic
List of genomes by YBao
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by Jennifer Jackson
GenBank database files by Mike Dyall-Smith
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by Peter Cock
Gain sequences after mapping reads to a reference genome by zwp112358
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by Jennifer Jackson
gff installation failed with easy_install by Mic
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by Mic
Regarding combining several txt files and producing one fastq file by Jennifer Jackson
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by Jennifer Jackson
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